PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.JK2E4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 548aa    MW: 60340.4 Da    PI: 6.1669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.JK2E4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.82.7e-121240735
         GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 t TplWR+gp  ++ LCnaCG ++r kg+
  Araip.JK2E4 12 TGTPLWRNGPPEKPVLCNACGSRWRTKGT 40
                 88********88888***********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.00961152IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-81240IPR013088Zinc finger, NHR/GATA-type
PfamPF003204.7E-101240IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-61244No hitNo description
CDDcd002028.16E-111452No hitNo description
PfamPF139192.0E-8295377IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MDVDSLQLSI ATGTPLWRNG PPEKPVLCNA CGSRWRTKGT LANYTPLHAR AEADDSEDQR  60
VSRVKIISLH KNKEMKSLKR KQNHDSVVVS GGLTPDYKYN QGFGKAVDED TSNRSSSGSA  120
ISNTESCAQF GGTDASDLTG PAQSVVWEAM VPSKKRTCVG RPKASSVEKL TKDLCTILHE  180
QQSYFSTSSE EELLFESETP MVSVEIGHGS VLIKHPSYVA REEVSEASAV SVDNKQCLVS  240
EAYSDSGPFL VYNDLNGMNF SSYGVDKVEN SADQEMQEEQ LKRHAFLHND KSQLERVQIL  300
GDHNSPLCSI DLNDVVNYKE FVRNMTNEDQ QLLLKFLPMV DTAKLPDSLK VMFNSSQFKE  360
NLTYFQQLLG EGVFDISFLG AKPEDCKTLK RLALSNLSKS KWVEHYSYLK RCKTTAAKSV  420
SQGSTGKASS NFANVKRLRD GRNQNSPELK TMMRSPKGMT IKIGSEGNEV VEDGSCYSPK  480
SLFALPPDAA SLLQVSSNFV EESSDHDVLV EVPSNSSFPQ AELLHPTSSF GAQASTSSSS  540
VYSHFVHN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201485.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H11e-141GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A0B2RRL00.0A0A0B2RRL0_GLYSO; GATA transcription factor 26
STRINGGLYMA11G04060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44243155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-135GATA transcription factor 26